IL_4V5D_040

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAGGGAACCC*GGGGUGCCCCGCGAGGGGAGCCCUA

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|AA|U|1000
4V5D|1|AA|A|1001
4V5D|1|AA|G|1001|||A
4V5D|1|AA|G|1002
4V5D|1|AA|G|1003
4V5D|1|AA|A|1004
4V5D|1|AA|A|1005
4V5D|1|AA|C|1006
4V5D|1|AA|C|1007
4V5D|1|AA|C|1008
*
4V5D|1|AA|G|1021
4V5D|1|AA|G|1022
4V5D|1|AA|G|1023
4V5D|1|AA|G|1024
4V5D|1|AA|U|1025
4V5D|1|AA|G|1026
4V5D|1|AA|C|1027
4V5D|1|AA|C|1028
4V5D|1|AA|C|1029
4V5D|1|AA|C|1030
4V5D|1|AA|G|1030|||A
4V5D|1|AA|C|1030|||B
4V5D|1|AA|G|1030|||C
4V5D|1|AA|A|1030|||D
4V5D|1|AA|G|1031
4V5D|1|AA|G|1032
4V5D|1|AA|G|1033
4V5D|1|AA|G|1034
4V5D|1|AA|A|1035
4V5D|1|AA|G|1036
4V5D|1|AA|C|1037
4V5D|1|AA|C|1038
4V5D|1|AA|C|1039
4V5D|1|AA|U|1040
4V5D|1|AA|A|1041

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3