IL_4V5D_053
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5D_053 not in the Motif Atlas
- Geometric match to IL_1ZZ5_002
- Geometric discrepancy: 0.1703
- The information below is about IL_1ZZ5_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V5D|1|AA|G|1405
4V5D|1|AA|U|1406
4V5D|1|AA|C|1407
*
4V5D|1|AA|G|1494
4V5D|1|AA|U|1495
4V5D|1|AA|C|1496
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AX
- MRNA
- Chain AY
- Transfer RNA; tRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: