IL_4V5D_065
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5D_065 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0519
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V5D|1|BA|G|188
4V5D|1|BA|G|189
4V5D|1|BA|A|190
4V5D|1|BA|A|191
4V5D|1|BA|C|192
4V5D|1|BA|U|193
4V5D|1|BA|G|194
*
4V5D|1|BA|C|201
4V5D|1|BA|U|202
4V5D|1|BA|C|203
4V5D|1|BA|A|204
4V5D|1|BA|G|205
4V5D|1|BA|U|206
4V5D|1|BA|A|207
4V5D|1|BA|C|208
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain B7
- 50S RIBOSOMAL PROTEIN L34
- Chain B8
- 50S RIBOSOMAL PROTEIN L35
- Chain BP
- 50S RIBOSOMAL PROTEIN L15
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