IL_4V5D_089

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_089 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2858

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5D|1|BA|G|875
4V5D|1|BA|C|876
4V5D|1|BA|U|877
4V5D|1|BA|A|878
4V5D|1|BA|G|879
*
4V5D|1|BA|C|898
4V5D|1|BA|A|899
4V5D|1|BA|A|900
4V5D|1|BA|A|901
4V5D|1|BA|C|902

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25