IL_4V5D_166
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5D_166 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0543
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V5D|1|BB|C|71
4V5D|1|BB|G|72
4V5D|1|BB|A|73
4V5D|1|BB|U|74
4V5D|1|BB|G|75
4V5D|1|BB|G|76
4V5D|1|BB|U|77
4V5D|1|BB|A|78
4V5D|1|BB|C|79
*
4V5D|1|BB|G|98
4V5D|1|BB|G|99
4V5D|1|BB|A|100
4V5D|1|BB|G|101
4V5D|1|BB|A|102
4V5D|1|BB|G|103
4V5D|1|BB|U|104
4V5D|1|BB|A|105
4V5D|1|BB|G|106
Current chains
- Chain BB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: