IL_4V5D_214

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUGC*GCUAAUC

Length

12 nucleotides

Bulged bases

4V5D|1|CA|U|1257, 4V5D|1|CA|A|1280, 4V5D|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|CA|G|1255
4V5D|1|CA|A|1256
4V5D|1|CA|U|1257
4V5D|1|CA|G|1258
4V5D|1|CA|C|1259
*
4V5D|1|CA|G|1276
4V5D|1|CA|C|1277
4V5D|1|CA|U|1278
4V5D|1|CA|A|1279
4V5D|1|CA|A|1280
4V5D|1|CA|U|1281
4V5D|1|CA|C|1282

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14