IL_4V5D_223

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_223 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.1167

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5D|1|CA|C|1431
4V5D|1|CA|G|1432
4V5D|1|CA|A|1433
4V5D|1|CA|A|1434
4V5D|1|CA|G|1435
*
4V5D|1|CA|C|1466
4V5D|1|CA|G|1467
4V5D|1|CA|A|1468
4V5D|1|CA|G|1469

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S RIBOSOMAL PROTEIN L19