IL_4V5D_232

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_232 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0608

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V5D|1|DA|U|239
4V5D|1|DA|G|240
4V5D|1|DA|A|241
4V5D|1|DA|G|242
4V5D|1|DA|U|243
4V5D|1|DA|A|244
4V5D|1|DA|G|245
*
4V5D|1|DA|C|253
4V5D|1|DA|G|254
4V5D|1|DA|A|255
4V5D|1|DA|A|256
4V5D|1|DA|A|257
4V5D|1|DA|G|258

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15