IL_4V5D_241

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_241 not in the Motif Atlas

Homologous match to IL_5J7L_259

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5D|1|DA|C|672
4V5D|1|DA|C|673
4V5D|1|DA|G|674
*
4V5D|1|DA|C|806
4V5D|1|DA|U|807
4V5D|1|DA|G|808

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15