IL_4V5D_253
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5D_253 not in the Motif Atlas
- Homologous match to IL_7RQB_029
- Geometric discrepancy: 0.0757
- The information below is about IL_7RQB_029
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.1
- Basepair signature
- cWW-tSW-cWS-cSH-tWH-R-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5D|1|DA|G|864
4V5D|1|DA|C|865
4V5D|1|DA|A|866
4V5D|1|DA|C|867
4V5D|1|DA|U|868
*
4V5D|1|DA|A|909
4V5D|1|DA|A|910
4V5D|1|DA|A|911
4V5D|1|DA|C|912
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
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