IL_4V5D_288

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4V5D|1|DA|G|1801, 4V5D|1|DA|G|1816, 4V5D|1|DA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_288 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0705

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V5D|1|DA|U|1798
4V5D|1|DA|G|1799
4V5D|1|DA|C|1800
4V5D|1|DA|G|1801
4V5D|1|DA|A|1802
4V5D|1|DA|A|1803
4V5D|1|DA|C|1804
*
4V5D|1|DA|G|1813
4V5D|1|DA|G|1814
4V5D|1|DA|A|1815
4V5D|1|DA|G|1816
4V5D|1|DA|G|1817
4V5D|1|DA|U|1818
4V5D|1|DA|A|1819
4V5D|1|DA|U|1820
4V5D|1|DA|A|1821

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S RIBOSOMAL PROTEIN L2