IL_4V5D_310

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_310 not in the Motif Atlas

Homologous match to IL_7RQB_092

Geometric discrepancy: 0.0735

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V5D|1|DA|G|2454
4V5D|1|DA|G|2455
*
4V5D|1|DA|C|2496
4V5D|1|DA|A|2497
4V5D|1|DA|C|2498

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D0

50S RIBOSOMAL PROTEIN L27

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DQ

50S RIBOSOMAL PROTEIN L16