IL_4V5D_312

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_312 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.1074

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4V5D|1|DA|A|2459
4V5D|1|DA|U|2460
4V5D|1|DA|C|2461
*
4V5D|1|DA|G|2489
4V5D|1|DA|G|2490
4V5D|1|DA|U|2491
4V5D|1|DA|U|2492
4V5D|1|DA|U|2493

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

Transfer RNA; tRNA

Chain D0

50S RIBOSOMAL PROTEIN L27

Chain DQ

50S RIBOSOMAL PROTEIN L16