IL_4V5D_324

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V5D|1|DA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_324 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0907

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V5D|1|DA|G|2737
4V5D|1|DA|A|2738
4V5D|1|DA|U|2739
4V5D|1|DA|A|2740
4V5D|1|DA|A|2741
4V5D|1|DA|C|2742
*
4V5D|1|DA|G|2762
4V5D|1|DA|G|2763
4V5D|1|DA|A|2764
4V5D|1|DA|A|2765
4V5D|1|DA|G|2766
4V5D|1|DA|C|2767

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DN

50S RIBOSOMAL PROTEIN L13