IL_4V5D_326

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_326 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V5D|1|DA|G|2843
4V5D|1|DA|G|2844
4V5D|1|DA|G|2845
4V5D|1|DA|G|2846
*
4V5D|1|DA|C|2870
4V5D|1|DA|C|2871
4V5D|1|DA|G|2872
4V5D|1|DA|A|2873
4V5D|1|DA|C|2874

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DR

50S RIBOSOMAL PROTEIN L17

Chain DT

50S RIBOSOMAL PROTEIN L19