IL_4V5D_341

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_341 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0745

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V5D|1|BA|G|1666
4V5D|1|BA|G|1667
4V5D|1|BA|A|1668
4V5D|1|BA|A|1669
4V5D|1|BA|C|1670
4V5D|1|BA|U|1671
4V5D|1|BA|C|1672
4V5D|1|BA|U|1673
4V5D|1|BA|G|1674
*
4V5D|1|BA|C|1990
4V5D|1|BA|U|1991
4V5D|1|BA|G|1992
4V5D|1|BA|U|1993
4V5D|1|BA|C|1994

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BO

50S RIBOSOMAL PROTEIN L14