IL_4V5D_346

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAGUUGC*GGCACUCUA

Length

16 nucleotides

Bulged bases

4V5D|1|CA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|CA|U|1122
4V5D|1|CA|A|1123
4V5D|1|CA|G|1124
4V5D|1|CA|U|1125
4V5D|1|CA|U|1126
4V5D|1|CA|G|1127
4V5D|1|CA|C|1128
*
4V5D|1|CA|G|1143
4V5D|1|CA|G|1144
4V5D|1|CA|C|1145
4V5D|1|CA|A|1146
4V5D|1|CA|C|1147
4V5D|1|CA|U|1148
4V5D|1|CA|C|1149
4V5D|1|CA|U|1150
4V5D|1|CA|A|1151

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10