IL_4V5E_119

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

4V5E|1|BA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_119 not in the Motif Atlas

Geometric match to IL_2OZB_001

Geometric discrepancy: 0.2692

The information below is about IL_2OZB_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V5E|1|BA|U|1489
4V5E|1|BA|A|1490
4V5E|1|BA|G|1491
*
4V5E|1|BA|C|1499
4V5E|1|BA|G|1500

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2