IL_4V5E_154

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V5E|1|BA|A|2572, 4V5E|1|BA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_154 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.0749

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V5E|1|BA|C|2512
4V5E|1|BA|G|2513
*
4V5E|1|BA|C|2571
4V5E|1|BA|A|2572
4V5E|1|BA|C|2573
4V5E|1|BA|G|2574

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

PEPTIDE CHAIN RELEASE FACTOR 2

Chain BE

50S RIBOSOMAL PROTEIN L3