IL_4V5E_173

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V5E|1|CA|C|48, 4V5E|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_173 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.103

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5E|1|CA|C|47
4V5E|1|CA|C|48
4V5E|1|CA|U|49
4V5E|1|CA|A|50
4V5E|1|CA|A|51
4V5E|1|CA|G|52
*
4V5E|1|CA|U|359
4V5E|1|CA|A|360
4V5E|1|CA|G|361

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12