3D structure

PDB id
4V5E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Insights into translational termination from the structure of RF2 bound to the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
GGAGC*GCGCCGGUGAAAUAC
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5E|1|DA|G|2124
4V5E|1|DA|G|2125
4V5E|1|DA|A|2126
4V5E|1|DA|G|2127
4V5E|1|DA|C|2128
*
4V5E|1|DA|G|2160
4V5E|1|DA|C|2161
4V5E|1|DA|G|2162
4V5E|1|DA|C|2163
4V5E|1|DA|C|2164
4V5E|1|DA|G|2165
4V5E|1|DA|G|2166
4V5E|1|DA|U|2167
4V5E|1|DA|G|2168
4V5E|1|DA|A|2169
4V5E|1|DA|A|2170
4V5E|1|DA|A|2171
4V5E|1|DA|U|2172
4V5E|1|DA|A|2173
4V5E|1|DA|C|2174

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain CW
Transfer RNA; tRNA
Chain DC
50S RIBOSOMAL PROTEIN L1

Coloring options:

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