IL_4V5F_275

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_275 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0849

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V5F|1|DA|A|1262
4V5F|1|DA|U|1263
4V5F|1|DA|G|1264
4V5F|1|DA|A|1265
4V5F|1|DA|G|1266
4V5F|1|DA|U|1267
4V5F|1|DA|A|1268
4V5F|1|DA|A|1269
*
4V5F|1|DA|U|2011
4V5F|1|DA|G|2012
4V5F|1|DA|A|2013
4V5F|1|DA|A|2014
4V5F|1|DA|A|2015
4V5F|1|DA|U|2016
4V5F|1|DA|U|2017

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DW

50S RIBOSOMAL PROTEIN L22