IL_4V5F_349

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

4V5F|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_349 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3603

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V5F|1|BA|C|280
4V5F|1|BA|G|281
4V5F|1|BA|A|282
4V5F|1|BA|A|283
4V5F|1|BA|U|284
4V5F|1|BA|C|285
*
4V5F|1|BA|G|356
4V5F|1|BA|A|357
4V5F|1|BA|U|358
4V5F|1|BA|A|359
4V5F|1|BA|G|360

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains