IL_4V5F_363

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCUAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUAGCA

Length

39 nucleotides

Bulged bases

4V5F|1|CA|G|1001|||A, 4V5F|1|CA|A|1005, 4V5F|1|CA|U|1025, 4V5F|1|CA|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5F|1|CA|U|997
4V5F|1|CA|G|998
4V5F|1|CA|C|999
4V5F|1|CA|U|1000
4V5F|1|CA|A|1001
4V5F|1|CA|G|1001|||A
4V5F|1|CA|G|1002
4V5F|1|CA|G|1003
4V5F|1|CA|A|1004
4V5F|1|CA|A|1005
4V5F|1|CA|C|1006
4V5F|1|CA|C|1007
*
4V5F|1|CA|G|1022
4V5F|1|CA|G|1023
4V5F|1|CA|G|1024
4V5F|1|CA|U|1025
4V5F|1|CA|G|1026
4V5F|1|CA|C|1027
4V5F|1|CA|C|1028
4V5F|1|CA|C|1029
4V5F|1|CA|C|1030
4V5F|1|CA|G|1030|||A
4V5F|1|CA|C|1030|||B
4V5F|1|CA|G|1030|||C
4V5F|1|CA|A|1030|||D
4V5F|1|CA|G|1031
4V5F|1|CA|G|1032
4V5F|1|CA|G|1033
4V5F|1|CA|G|1034
4V5F|1|CA|A|1035
4V5F|1|CA|G|1036
4V5F|1|CA|C|1037
4V5F|1|CA|C|1038
4V5F|1|CA|C|1039
4V5F|1|CA|U|1040
4V5F|1|CA|A|1041
4V5F|1|CA|G|1042
4V5F|1|CA|C|1043
4V5F|1|CA|A|1044

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3