IL_4V5F_367

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

4V5F|1|CA|U|1257, 4V5F|1|CA|C|1260, 4V5F|1|CA|U|1278, 4V5F|1|CA|A|1280, 4V5F|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5F|1|CA|G|1255
4V5F|1|CA|A|1256
4V5F|1|CA|U|1257
4V5F|1|CA|G|1258
4V5F|1|CA|C|1259
4V5F|1|CA|C|1260
4V5F|1|CA|A|1261
4V5F|1|CA|C|1262
*
4V5F|1|CA|G|1273
4V5F|1|CA|G|1274
4V5F|1|CA|A|1275
4V5F|1|CA|G|1276
4V5F|1|CA|C|1277
4V5F|1|CA|U|1278
4V5F|1|CA|A|1279
4V5F|1|CA|A|1280
4V5F|1|CA|U|1281
4V5F|1|CA|C|1282

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CU

30S RIBOSOMAL PROTEIN THX