IL_4V5F_376

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UAGG*CCG

Length

7 nucleotides

Bulged bases

4V5F|1|DA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_376 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.3469

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V5F|1|DA|U|1489
4V5F|1|DA|A|1490
4V5F|1|DA|G|1491
4V5F|1|DA|G|1492
*
4V5F|1|DA|C|1498
4V5F|1|DA|C|1499
4V5F|1|DA|G|1500

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L2