IL_4V5G_127

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V5G|1|BA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_127 not in the Motif Atlas

Geometric match to IL_8VTW_080

Geometric discrepancy: 0.1602

The information below is about IL_8VTW_080

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V5G|1|BA|G|2070
4V5G|1|BA|A|2071
*
4V5G|1|BA|U|2438
4V5G|1|BA|A|2439
4V5G|1|BA|C|2440
4V5G|1|BA|C|2441

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BD

50S RIBOSOMAL PROTEIN L2