IL_4V5G_223
3D structure
- PDB id
- 4V5G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5G_223 not in the Motif Atlas
- Homologous match to IL_7RQB_007
- Geometric discrepancy: 0.1072
- The information below is about IL_7RQB_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V5G|1|DA|U|239
4V5G|1|DA|G|240
4V5G|1|DA|A|241
4V5G|1|DA|G|242
4V5G|1|DA|U|243
4V5G|1|DA|A|244
4V5G|1|DA|G|245
*
4V5G|1|DA|C|253
4V5G|1|DA|G|254
4V5G|1|DA|A|255
4V5G|1|DA|A|256
4V5G|1|DA|A|257
4V5G|1|DA|G|258
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D8
- 50S RIBOSOMAL PROTEIN L35
- Chain DP
- 50S RIBOSOMAL PROTEIN L15
Coloring options: