IL_4V5G_259

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACC*GGC

Length

7 nucleotides

Bulged bases

4V5G|1|DA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_259 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.3204

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5G|1|DA|G|1219
4V5G|1|DA|A|1220
4V5G|1|DA|C|1221
4V5G|1|DA|C|1221|||A
*
4V5G|1|DA|G|1228
4V5G|1|DA|G|1229
4V5G|1|DA|C|1230

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DV

50S RIBOSOMAL PROTEIN L21