3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5G_301 not in the Motif Atlas
Geometric match to IL_1S03_004
Geometric discrepancy: 0.1915
The information below is about IL_1S03_004
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

4V5G|1|DA|G|2454
4V5G|1|DA|G|2455
*
4V5G|1|DA|C|2496
4V5G|1|DA|A|2497
4V5G|1|DA|C|2498

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain D0
50S RIBOSOMAL PROTEIN L27
Chain DE
50S RIBOSOMAL PROTEIN L3
Chain DQ
50S RIBOSOMAL PROTEIN L16

Coloring options:


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