IL_4V5G_337

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUCGCC*GGCGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_337 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3387

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V5G|1|AA|G|1435
4V5G|1|AA|U|1436
4V5G|1|AA|C|1437
4V5G|1|AA|G|1438
4V5G|1|AA|C|1439
4V5G|1|AA|C|1440
*
4V5G|1|AA|G|1461
4V5G|1|AA|G|1462
4V5G|1|AA|C|1463
4V5G|1|AA|G|1464
4V5G|1|AA|C|1465
4V5G|1|AA|C|1466

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S RIBOSOMAL PROTEIN L19