3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GUCGCC*GGCGCC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5G_337 not in the Motif Atlas
Geometric match to IL_6O5F_001
Geometric discrepancy: 0.3387
The information below is about IL_6O5F_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

4V5G|1|AA|G|1435
4V5G|1|AA|U|1436
4V5G|1|AA|C|1437
4V5G|1|AA|G|1438
4V5G|1|AA|C|1439
4V5G|1|AA|C|1440
*
4V5G|1|AA|G|1461
4V5G|1|AA|G|1462
4V5G|1|AA|C|1463
4V5G|1|AA|G|1464
4V5G|1|AA|C|1465
4V5G|1|AA|C|1466

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AT
30S RIBOSOMAL PROTEIN S20
Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BT
50S RIBOSOMAL PROTEIN L19

Coloring options:


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