IL_4V5G_339

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAGCC*GGUGGG

Length

11 nucleotides

Bulged bases

4V5G|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_339 not in the Motif Atlas

Geometric match to IL_5VOE_003

Geometric discrepancy: 0.3998

The information below is about IL_5VOE_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V5G|1|BA|C|288
4V5G|1|BA|A|289
4V5G|1|BA|G|290
4V5G|1|BA|C|291
4V5G|1|BA|C|292
*
4V5G|1|BA|G|348
4V5G|1|BA|G|349
4V5G|1|BA|U|350
4V5G|1|BA|G|351
4V5G|1|BA|G|352
4V5G|1|BA|G|353

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains