IL_4V5G_366

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGG*UCCC

Length

7 nucleotides

Bulged bases

4V5G|1|BA|C|2879, 4V5G|1|BA|C|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_366 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3377

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V5G|1|BA|G|2837
4V5G|1|BA|G|2838
4V5G|1|BA|G|2839
*
4V5G|1|BA|U|2878
4V5G|1|BA|C|2879
4V5G|1|BA|C|2880
4V5G|1|BA|C|2881

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19