IL_4V5G_401
3D structure
- PDB id
- 4V5G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGAGG*CCGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5G_401 not in the Motif Atlas
- Geometric match to IL_8C3A_028
- Geometric discrepancy: 0.2724
- The information below is about IL_8C3A_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V5G|1|DA|G|1856
4V5G|1|DA|G|1857
4V5G|1|DA|G|1858
4V5G|1|DA|A|1859
4V5G|1|DA|G|1860
4V5G|1|DA|G|1861
*
4V5G|1|DA|C|1881
4V5G|1|DA|C|1882
4V5G|1|DA|G|1883
4V5G|1|DA|A|1884
4V5G|1|DA|A|1885
4V5G|1|DA|C|1886
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain CW
- Transfer RNA; tRNA
- Chain D1
- 50S RIBOSOMAL PROTEIN L28
- Chain DC
- 50S RIBOSOMAL PROTEIN L1
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