IL_4V5J_021

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGCCAGC*GCGGUAAUAC

Length

18 nucleotides

Bulged bases

4V5J|1|AA|A|532, 4V5J|1|AA|U|534, 4V5J|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|AA|G|515
4V5J|1|AA|U|516
4V5J|1|AA|G|517
4V5J|1|AA|C|518
4V5J|1|AA|C|519
4V5J|1|AA|A|520
4V5J|1|AA|G|521
4V5J|1|AA|C|522
*
4V5J|1|AA|G|527
4V5J|1|AA|C|528
4V5J|1|AA|G|529
4V5J|1|AA|G|530
4V5J|1|AA|U|531
4V5J|1|AA|A|532
4V5J|1|AA|A|533
4V5J|1|AA|U|534
4V5J|1|AA|A|535
4V5J|1|AA|C|536

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AX

MRNA

Chain AY

PEPTIDE CHAIN RELEASE FACTOR 2