IL_4V5J_038
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5J_038 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.2845
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_82096.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V5J|1|AA|U|952
4V5J|1|AA|G|953
4V5J|1|AA|G|954
*
4V5J|1|AA|C|1226
4V5J|1|AA|A|1227
4V5J|1|AA|C|1228
4V5J|1|AA|A|1229
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AS
- 30S RIBOSOMAL PROTEIN S19
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- PEPTIDE CHAIN RELEASE FACTOR 2
Coloring options: