IL_4V5J_066

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_066 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0526

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V5J|1|BA|U|239
4V5J|1|BA|G|240
4V5J|1|BA|A|241
4V5J|1|BA|G|242
4V5J|1|BA|U|243
4V5J|1|BA|A|244
4V5J|1|BA|G|245
*
4V5J|1|BA|C|253
4V5J|1|BA|G|254
4V5J|1|BA|A|255
4V5J|1|BA|A|256
4V5J|1|BA|A|257
4V5J|1|BA|G|258

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BP

50S RIBOSOMAL PROTEIN L15