IL_4V5J_189

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_189 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1611

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V5J|1|CA|G|446
4V5J|1|CA|G|447
4V5J|1|CA|A|448
4V5J|1|CA|C|449
4V5J|1|CA|G|450
*
4V5J|1|CA|C|483
4V5J|1|CA|G|484
4V5J|1|CA|G|485
4V5J|1|CA|U|486
4V5J|1|CA|A|487
4V5J|1|CA|C|488

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CP

30S RIBOSOMAL PROTEIN S16