IL_4V5J_191
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5J_191 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1075
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
4V5J|1|CA|C|504
4V5J|1|CA|G|505
4V5J|1|CA|G|506
4V5J|1|CA|C|507
4V5J|1|CA|C|508
4V5J|1|CA|A|509
4V5J|1|CA|A|510
4V5J|1|CA|C|511
*
4V5J|1|CA|G|540
4V5J|1|CA|G|541
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CD
- 30S RIBOSOMAL PROTEIN S4
- Chain CE
- 30S RIBOSOMAL PROTEIN S5
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
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