IL_4V5J_196

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_196 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.0936

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

4V5J|1|CA|G|597
4V5J|1|CA|U|598
*
4V5J|1|CA|A|640
4V5J|1|CA|U|641
4V5J|1|CA|A|642
4V5J|1|CA|C|643

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CH

30S RIBOSOMAL PROTEIN S8

Chain CQ

30S RIBOSOMAL PROTEIN S17