IL_4V5J_224
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5J_224 not in the Motif Atlas
- Geometric match to IL_5MWI_007
- Geometric discrepancy: 0.1338
- The information below is about IL_5MWI_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
4V5J|1|CA|G|1405
4V5J|1|CA|U|1406
4V5J|1|CA|C|1407
*
4V5J|1|CA|G|1494
4V5J|1|CA|U|1495
4V5J|1|CA|C|1496
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CX
- MRNA
- Chain CY
- PEPTIDE CHAIN RELEASE FACTOR 2
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: