IL_4V5J_271

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCGAAGACAGCC*GGUCGAGUG

Length

22 nucleotides

Bulged bases

4V5J|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|DA|C|1041
4V5J|1|DA|G|1042
4V5J|1|DA|C|1043
4V5J|1|DA|G|1044
4V5J|1|DA|A|1045
4V5J|1|DA|A|1046
4V5J|1|DA|G|1047
4V5J|1|DA|A|1048
4V5J|1|DA|C|1049
4V5J|1|DA|A|1050
4V5J|1|DA|G|1051
4V5J|1|DA|C|1052
4V5J|1|DA|C|1053
*
4V5J|1|DA|G|1106
4V5J|1|DA|G|1107
4V5J|1|DA|U|1108
4V5J|1|DA|C|1109
4V5J|1|DA|G|1110
4V5J|1|DA|A|1111
4V5J|1|DA|G|1112
4V5J|1|DA|U|1113
4V5J|1|DA|G|1114

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DJ

50S RIBOSOMAL PROTEIN L10

Chain DZ

50S RIBOSOMAL PROTEIN L25