IL_4V5J_312

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCGUAGGAUAGGU*ACCCUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|DA|C|2108
4V5J|1|DA|U|2109
4V5J|1|DA|G|2110
4V5J|1|DA|C|2111
4V5J|1|DA|G|2112
4V5J|1|DA|U|2113
4V5J|1|DA|A|2114
4V5J|1|DA|G|2115
4V5J|1|DA|G|2116
4V5J|1|DA|A|2117
4V5J|1|DA|U|2118
4V5J|1|DA|A|2119
4V5J|1|DA|G|2120
4V5J|1|DA|G|2121
4V5J|1|DA|U|2122
*
4V5J|1|DA|A|2176
4V5J|1|DA|C|2177
4V5J|1|DA|C|2178
4V5J|1|DA|C|2179
4V5J|1|DA|U|2180
4V5J|1|DA|G|2181

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1