IL_4V5J_321
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 4V5J|1|DA|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5J_321 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.1034
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
4V5J|1|DA|A|2459
4V5J|1|DA|U|2460
4V5J|1|DA|C|2461
*
4V5J|1|DA|G|2489
4V5J|1|DA|G|2490
4V5J|1|DA|U|2491
4V5J|1|DA|U|2492
4V5J|1|DA|U|2493
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain CY
- PEPTIDE CHAIN RELEASE FACTOR 2
- Chain D0
- 50S RIBOSOMAL PROTEIN L27
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: