IL_4V5J_344

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_344 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.1942

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5J|1|AA|G|450
4V5J|1|AA|A|451
4V5J|1|AA|A|452
4V5J|1|AA|A|453
4V5J|1|AA|C|454
4V5J|1|AA|C|455
4V5J|1|AA|C|456
*
4V5J|1|AA|G|475
4V5J|1|AA|G|476
4V5J|1|AA|A|477
4V5J|1|AA|C|479
4V5J|1|AA|U|480
4V5J|1|AA|G|481
4V5J|1|AA|A|482
4V5J|1|AA|C|483

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16