IL_4V5J_350

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCU

Length

35 nucleotides

Bulged bases

4V5J|1|AA|G|1001|||A, 4V5J|1|AA|G|1024, 4V5J|1|AA|U|1025, 4V5J|1|AA|C|1030|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|AA|A|1001
4V5J|1|AA|G|1001|||A
4V5J|1|AA|G|1002
4V5J|1|AA|G|1003
4V5J|1|AA|A|1004
4V5J|1|AA|A|1005
4V5J|1|AA|C|1006
4V5J|1|AA|C|1007
4V5J|1|AA|C|1008
4V5J|1|AA|G|1009
*
4V5J|1|AA|U|1020
4V5J|1|AA|G|1021
4V5J|1|AA|G|1022
4V5J|1|AA|G|1023
4V5J|1|AA|G|1024
4V5J|1|AA|U|1025
4V5J|1|AA|G|1026
4V5J|1|AA|C|1027
4V5J|1|AA|C|1028
4V5J|1|AA|C|1029
4V5J|1|AA|C|1030
4V5J|1|AA|G|1030|||A
4V5J|1|AA|C|1030|||B
4V5J|1|AA|G|1030|||C
4V5J|1|AA|A|1030|||D
4V5J|1|AA|G|1031
4V5J|1|AA|G|1032
4V5J|1|AA|G|1033
4V5J|1|AA|G|1034
4V5J|1|AA|A|1035
4V5J|1|AA|G|1036
4V5J|1|AA|C|1037
4V5J|1|AA|C|1038
4V5J|1|AA|C|1039
4V5J|1|AA|U|1040

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA