Loop IL_4V5J

3D structure

PDB id: 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: GGAGCCUGUGAACCCCCG*UGGGGGGGAGGCGCCGGUGAAAUAC
Length: 43 nucleotides
Bulged bases: 4V5J|1|DA|U|2132, 4V5J|1|DA|A|2169, 4V5J|1|DA|A|2170
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5J|1|DA|G|2124
4V5J|1|DA|G|2125
4V5J|1|DA|A|2126
4V5J|1|DA|G|2127
4V5J|1|DA|C|2128
4V5J|1|DA|C|2129
4V5J|1|DA|U|2130
4V5J|1|DA|G|2131
4V5J|1|DA|U|2132
4V5J|1|DA|G|2133
4V5J|1|DA|A|2134
4V5J|1|DA|A|2135
4V5J|1|DA|C|2136
4V5J|1|DA|C|2137
4V5J|1|DA|C|2138
4V5J|1|DA|C|2139
4V5J|1|DA|C|2140
4V5J|1|DA|G|2141
*
4V5J|1|DA|U|2150
4V5J|1|DA|G|2151
4V5J|1|DA|G|2152
4V5J|1|DA|G|2153
4V5J|1|DA|G|2154
4V5J|1|DA|G|2155
4V5J|1|DA|G|2156
4V5J|1|DA|G|2157
4V5J|1|DA|A|2158
4V5J|1|DA|G|2159
4V5J|1|DA|G|2160
4V5J|1|DA|C|2161
4V5J|1|DA|G|2162
4V5J|1|DA|C|2163
4V5J|1|DA|C|2164
4V5J|1|DA|G|2165
4V5J|1|DA|G|2166
4V5J|1|DA|U|2167
4V5J|1|DA|G|2168
4V5J|1|DA|A|2169
4V5J|1|DA|A|2170
4V5J|1|DA|A|2171
4V5J|1|DA|U|2172
4V5J|1|DA|A|2173
4V5J|1|DA|C|2174

Current chains

Chain DA: 23S RIBOSOMAL RNA

Nearby chains

Chain AA: Small subunit ribosomal RNA; SSU rRNA
Chain CW: Transfer RNA; tRNA
Chain DC: 50S RIBOSOMAL PROTEIN L1

IL_4V5J_393