IL_4V5K_037
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5K_037 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.2776
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V5K|1|AA|U|952
4V5K|1|AA|G|953
4V5K|1|AA|G|954
*
4V5K|1|AA|C|1226
4V5K|1|AA|A|1227
4V5K|1|AA|C|1228
4V5K|1|AA|A|1229
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AS
- 30S RIBOSOMAL PROTEIN S19
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- COLICIN-E3
Coloring options: