IL_4V5K_044

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAGUUGC*GGCACUCUA

Length

16 nucleotides

Bulged bases

4V5K|1|AA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|AA|U|1122
4V5K|1|AA|A|1123
4V5K|1|AA|G|1124
4V5K|1|AA|U|1125
4V5K|1|AA|U|1126
4V5K|1|AA|G|1127
4V5K|1|AA|C|1128
*
4V5K|1|AA|G|1143
4V5K|1|AA|G|1144
4V5K|1|AA|C|1145
4V5K|1|AA|A|1146
4V5K|1|AA|C|1147
4V5K|1|AA|U|1148
4V5K|1|AA|C|1149
4V5K|1|AA|U|1150
4V5K|1|AA|A|1151

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10