IL_4V5K_045

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUACAAAG*CAAAAAGG

Length

16 nucleotides

Bulged bases

4V5K|1|AA|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|AA|C|1246
4V5K|1|AA|U|1247
4V5K|1|AA|A|1248
4V5K|1|AA|C|1249
4V5K|1|AA|A|1250
4V5K|1|AA|A|1251
4V5K|1|AA|A|1252
4V5K|1|AA|G|1253
*
4V5K|1|AA|C|1284
4V5K|1|AA|A|1285
4V5K|1|AA|A|1286
4V5K|1|AA|A|1287
4V5K|1|AA|A|1288
4V5K|1|AA|A|1289
4V5K|1|AA|G|1290
4V5K|1|AA|G|1291

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AU

30S RIBOSOMAL PROTEIN THX